I run Linux on Linux via vagrant, it's not about my program running faster it's about isolating a client projects dependencies from each other so when I have to work on that system that is still in production on PHP Current-1 or Ruby-1 I don't have to fuck with my host OS at all.
In fact I have very few developer bits and bobs installed on the host (mostly just JetBrains stuff) and all the actual tooling is run in the VM, this makes for far easier deploys for myself since my process is
pull projectname/(site||name), pull projectname/vagrant, vagrant up.
It takes me less than 30 minutes from reinstalling to having half a dozen projects with all their weird dependencies and cruft installed and I never have to worry about breaking something else or needing to blow away a machine for some reason.
I'm happy to trade some performance for running damn near everything in a guest OS for that.