The Harvard Personal Genome Project Over 200 whole genomes and I think over 500 genotyping data (23andMe and the like) released under a CC0 license with sporadic phenotype data [1]. Open Humans [2] has a bunch of data with a convenient API [3]. OpenSNP has a lot of genotyping data (23andMe etc.) available for download [4].

For a more comprehensive list check out one of the many "Awesome Public Datasets" [5] (biology section).

[1] https://my.pgp-hms.org/public_genetic_data

[2] https://www.openhumans.org/members/

[3] https://www.openhumans.org/public-data-api/

[4] https://opensnp.org/

[5] https://github.com/caesar0301/awesome-public-datasets#biolog...

All US publicly funded sequencing data is required to be posted on the NIH's Sequence Read Archive within a few months of it's generation.

There are petabytes of open data there for you pick from every kind of organism. Go nuts.

https://www.ncbi.nlm.nih.gov/sra

for genetic data ensemble.org has a lot.

http://useast.ensembl.org/info/about/species.html

for example Humans: You end up here ftp://ftp.ensembl.org/pub/release-86/fasta/homo_sapiens/dna/

there is a read me which helps figure out what this stuff is, or ask your friendly neighborhood biologist.

ftp://ftp.ensembl.org/pub/release-86/fasta/homo_sapiens/dna/README