She could have lost (to pick a blue state at random) Vermont and still held the popular vote. What you're saying is that by removing the most populous blue state, she'd lose the popular vote. How is that relevant? States are arbitrary boundaries; we could slice and dice California up into 55 states, giving each one an electoral vote. Now we could remove any one of those and she'd still maintain the popular vote. We're allowing an arbitrary division determine our president, rather than a somewhat less arbitrary "majority of voters".
But all -that- aside, the parent comment was referencing the OP. Literally nothing was said about the popular vote; the OP is about possible voting irregularities in some of the swing states that might lead to Hillary also clinching the electoral college majority (and the parent comment was saying how they're not very happy with the prospect of a recount).
It seems like the electoral college helps compartmentalize the votes, preventing an "overflow" of opinion in certain areas from outweighing the wider population's combined opinion.
| Popular vote totals: | |
| Clinton | 60900953 |
| Trump | 60328203 |
|-----------------------------------------------+----------|
| Los Angeles County votes: | |
| Clinton | 1654626 |
| Trump | 542591 |
|-----------------------------------------------+----------|
| California votes: | |
| Clinton | 5931283 |
| Trump | 3184721 |
|-----------------------------------------------+----------|
| Popular vote totals minus Los Angeles County: | |
| Clinton | 59246327 |
| Trump | 59785612 |
|-----------------------------------------------+----------|
| Popular vote totals minus California: | |
| Clinton | 54969670 |
| Trump | 57143482 |