Normally, if you want to create something like this, it's an auxotroph. So it shouldn't survive outside of the carbon-sequestering vat.
Or it's all on a plasmid, so once it's out of the vat plasmid won't be maintained.
Or these will be created in "Synells" [0] that can't really replicate.
Though that's a really interesting thought. If we find a technology to do anything about CO2 levels, it seems plausible that we're going to accidentally go too far in the other direction.
[0] http://www.nature.com/nchem/journal/vaop/ncurrent/full/nchem...