I have to agree with you there. I've always used the 80/20 rule for prioritizing immediate fixes: If I have to take a support call from more than 20% of the people I hae deployed my software to (and in some cases, this may amount to one customer), then whatever the circumstance is, it's treated as a high priority bug.
That said, Windows Subsystem for Linux is beta and they went out of their way to make that clear -- going so so far as to put (beta) in the Add Features dialog. And this was the right move, IMO. Such a small percentage of their user base use this feature -- it's targeted at us and we're used to dealing with beta problems. They hit a large enough number of users to test the feature thoroughly, while managing expectations that it's not ready for prime time, yet.
> "Silly users, stop trying to do things we didn't plan for you to do!"
Yep, that's pretty much it. But in the context of a beta product, it's more "Here's something we are getting large numbers of reports about while we're refining the software for production release. In the meantime, don't do this."
Now, if they release this production with that limitation and nothing to prevent you from destroying your data if you modify that folder, that'd be a major oversight, but I have a feeling that'll be resolved. My hope would be that you'd be able to mess with these files using whatever tool you wish, but even adding a dialog to Explorer, and an error in PowerShell/Cmd that catches you trying to do something that'll break the subsystem would be an improvement.