So this article does the Maxwell Demon some injustice. There is a key point about the demon that when he is 'sorting' the particles into two bulbs or rooms, that the gate he is working on is frictionless. In this way, you can can see that there is no energy entering the system, yet the entropy is decreasing.
Now, this is where things get interesting to me (please correct me if I'm wrong here). What the demon is adding is information to the system. It decreases entropy. Natural selection is a sort of maxwell demon in it's selection process. I have a theory though that it all evens out. The more complex/evolved the organism, the more entropy the organisms generate themselves.