I understand the frustration, but the Gödel objection will always be raised as long as someone asks for a prover that can prove itself correct (read "proves false statements or fails to prove true statements," which just is consistency). To put a finer point on it, once you get
how "an axiomatic system [can't prove] its own consistency," it actually is rather obvious that "a theorem prover [can't prove] itself correct." How would it? Without axioms or classical logic? What's it doing for the things that aren't it itself?
Notice though, Gödel's incompleteness didn't end formal logic (all the better for Gödel). I know we're in a public forum, but I would note that your "But what about the practical applications!?" is misplaced (though not poor analogous reasoning--I think you're hitting the nail on the head, honestly). Formal verification is not futile because of Gödel's proof. However, a self-verifying formal system is--which is a useful insight, especially for those interested in formal verification.
As an aside, I don't think you need to convince anyone that's actually recreated Gödel's proofs to approve of continued work on formally verified code. We would get excited about that stuff even if it weren't practical.