Why didn't you know where minor thirds come from?
Why do you seem to be denying that simple harmonic ratios are where harmony comes from? (EDIT: he's not, it's fine)
Why are you promoting a theory of music with absurd axioms, which manage to explain the octatonic scale (which almost nobody uses) better than the pentatonic scale (which almost everybody uses)? That's not a sign of a good theory.
Yes, he chose to list only the intervals in the major scale. Showing the intervals in the major and minor scale at the same time would have been very confusing.
I understand now that you weren't trying to say that minor thirds were a hole in the theory he presented, but that they were a hole in the way he presented it. I took issue when I thought you were criticizing the theory itself, because what he presented is a simplified view of generally accepted foundations of harmony. I apologize for mis-characterizing your position there.
There is more that could have been said -- and it sounds like we agree on what could have been said -- but I think it's not necessary to go into all the details of the construction of scales, including temperament, just to write a blog post. Describing temperament accurately, without handwaving, requires a book.
I thought you didn't understand harmony, you thought I didn't understand temperament, I was talking from a historical point of view, you were talking from a jazz point of view.
We might disagree on two kind of minor points:
* How this blog post should have been written
* I'm uncomfortable with describing fundamentals of music from a jazz point of view, because that seems to me to be putting the effect before the cause.