These aren't just the waxings of a hippie distracted at work, I can point you to studies that demonstrate the repeatability of it all (i.e., 'most important experience of life' claims, noetic properties, ineffable, etc.) Many people use these descriptors when regarding their respective psychedelic journeys.
In my opinion, the reason some people have awe-inspiring life-changing experiences and some just see neat visuals or have the ominous 'bad trip' goes back to my first comment. Set, setting, and intention are absolutely everything with these substances. The stuff just seems to be of a higher order, and it seems it gives you just what you deserve.
Our brain chemistry is exceedingly complex. Also, our emotional state primes our brain with other chemicals. Fear can produce a rush of adrenilne, for example.
So yes, thinking about it 'correctly' changes your brain. Your brain is a chemical reaction, so adding another thought modifying chemical is likely to have different results based on the chemicals already there.