This leads to 2 errors, one irritating, one that prevents the program from functioning.
Irritating: GTK+ loads the system GTK theme during a call to gtk_init(). If this theme is based on clearlooks but contains declarations unknown to our (older) version of Clearlooks, you get errors.
Blocking: GTK+ loads the system GTK theme during a call to gtk_init(). If the theme file defines a "color theme", then when Ardour defines its own, GTK will block for ever, because of a bug in GTK+2. This doesn't happen if the system GTK theme has no color theme definition.
Those are the two main issues. They cannot be worked around without rebuilding the GTK+ stack so that it cannot or will not load the system GTK theme.