Not drilling piles to bedrock is the key.
From the article too: "-the famed Petronas Twin Towers in Malaysia, for example, sank only a half inch since opening in 1998-"
I have worked and lived in SE Asia for 8 years, and I can tell you that there are always problems like this when they fail to go deep enough on the piles.
I have also been reading up on the shorter-than-expected life expectancy of iron rebar in concrete construction. They were supposed to be good for 100 - 1000 years. Now, there are studies saying remedial works will probably be needed in 20 to 75 years!
I wouldn't buy into a building that sank so much so rapidly, is tilting too, and is in a seismic zone like SF. Steel would be better to fight the bending due to tilt. Concrete is good for compressive loading mainly, not bending or shear. I hope they used some sort of non-ferrous reinforcement like fibers or mesh.
On every job I have worked on, we always recommend a survey of the structure for up to 2 years each month. When settling seems to level off after initial construction for 4 months straight, it is passed to the owner to maintain a survey at their discretion.
I am used to seeing 2 inches per year on new construction, but I am amazed the Petronas Towers only have sunk a half inch.