But the wrapping is quite off-putting to me; the author seems to misunderstand both music theory and science, and rather deeply. I don't see a scientific theory here at all. To be called science, it needs to have a hypothesis and be falsifiable, and after that get tested experimentally and proved - I don't see that, nor even a stab at a metric that is verifiable. What I see here is note relations described using science terminology instead of music terminology. That's not science, that's just someone using the terminology they're comfortable with rather than learn the accepted paradigm.
"The more factored a theory and the more emergent the observed phenomena from the theory, the more satisfying the theory." - Feynman.
It's ironic that this better explains existing music theory than the one presented here, even though Feynman wasn't talking about music theory.
The author accuses music theory of being pseudo-science, when music theory is not and never was attempting to be science, and yet the author proposes a theory of music claiming to be science that in fact isn't science.
Unfortunately, this 'theory' here only seems to contend with the first two of the 32 chapters in my copy of "Harmony and Voice Leading", and this mainly talks about what makes notes sound good, not what makes music sound good.
Also unfortunately, the author doesn't seem to be aware of what's going on in modern music theory, which is exploring things like how to compose music out of the beat frequencies that exist as harmonic dissonances between two or more notes. A lot of the physics of harmonics is currently already being incorporated into music theory.