mikk14 is right; the connections were filtered out below a particular threshold (set that threshold too low and everything is connected to everything; set it too high and you miss meaningful connections).

But note that precisely because git/github is used in combination with almost all other tags, it doesn't have a high correlation with any particular technology. A correlation (roughly) means "If I know you use tag X, you're more likely to also use tag Y." But knowing someone uses git doesn't let you guess what other technologies you use, because as you note they can use almost anything.

In short, if you're connected to everything, that means you're correlated with nothing.