"This could mean nothing less than the fall of the Standard Model of particle physics (SM)"
No, it means that the SM is an approximation to a deeper theory, which everybody already believes anyway and has for several decades. Models don't "fall" just because they turn out to be approximations.
"The SM describes what the building blocks of the universe are and how they work, and from there, at least in principle, explains every other phenomenon in nature."
No, it doesn't. The SM doesn't include gravity. It also has twenty-six free parameters that have to be determined from experiments; it doesn't explain why those parameters take the values they do. So it's obviously incomplete, and everybody has known that for several decades.
(Yes, the article does go on to talk about the SM being incomplete. But that just means it contradicts itself.)
In short: the article talks like this discovery is somehow a huge change in how everybody views the SM. In fact it's business as usual: we built experiments to try to discover new physics to help us extend a model we knew was incomplete, and now those experiments are bearing fruit. This is normal science. It is not some huge rift in particle physics.