But the point of the article is that there is more to computer vision. Stereo, optical flow, geometry, and physics can only be aided by deep learning so much.
Another point not mentioned is the computational power required for deep learning. Consider programming the physics for a ball rolling down an incline. You could use (1) the math itself, vs. (2) a neural net. It's clear that the direct math approach could be orders of magnitude faster than neural nets. I wouldn't be surprised if directly coding the physics would achieve 1,000x the performance of a neural net.