ALIS is the logistics system for the program that has an off-jet and on-jet component. ALIS takes the role of a traditional computerized maintenance management system and expands it to include an on-aircraft prognostics and health monitoring component. The idea is to have the jet tell you what's wrong with itself.
The article you linked to is about the F-35's mission systems software, which is really a software suite that encompasses all the computers on the aircraft itself. The MS software load provides all the stuff necessary to make the jet's hardware do what it needs to do to fight.
EDIT: I am merely seeking clarification, not trying to evade answering.
I'm not sure I'm making a ton of sense. It's just really interesting, I'm in Denmark and our government are about to pick which fighter plane will replace our old F-16s, and the F-35 is the favorite right now. This is despite experts saying it's a bad plane. What I understood from your comment is that it will fly just fine, but bugs in the ALIS software would make it harder to operate than anticipated.
For years, the F-35 project has been calling ALIS absolutely critical. Now, they seem to be saying that the F-35 can fly without it and that ALIS only keeps the cost of ownership down.
I suspect that the real answer to that question is either classified or closely held amongst a core group.
So I guess we can wait and see what happens on the 31 day? SNAFU is all that comes to mind.
I'm not wholly sure '15 hours uptime' on a computer system is all that confidence-inducing, regardless of whether or not the plane can be reset after however few hours of flight-time it's able to muster.