A lot of it depends on the particulars of your database system. But there are certainly tools/solutions that exist, and essentially they all boil down to the same pattern: migration scripts should be executed exactly once in order. How this is done varies.

I do a lot in the .NET/SQL Server world, and my tool of choice is one that I wrote: http://josephdaigle.me/2016/04/03/introducing-horton.html. Conceptually, what this tool does could work for any RDBMS.