So I think the issue is somewhat bigger than reddit or HN or even just a certain slice of users. It seems to be a fundamental problem in understanding up/down votes. Maybe psychologically we're inclined to downvote when we disagree, whether consciously or not.
I am also guilty of this even though I know better. It's hard to resist downvoting something I disagree with. It's like a natural response I have to actively work against.
Edits: grammar / clarifying wording