JPGs in PDF form? Both of those formats will be around forever.
I recently scanned a bunch of books using gscan2pdf; it makes it relatively easy, and integrates some decent utilities like Tesseract for OCR. (Some fiddling with controls meant that I could start playing a movie and mechanically flip pages and punch the scan button.)
Relatively high-resolution scans like 3-500 DPI mean you can get big PDFs (~200MB for a big anthology was normal), but this isn't much of a concern to me: I can clean them up later if I really need space, and in an era where 1.5tb is 100$, 200MB is nothing (1 or 2 cents of space?).