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The distributed nature just means that if attackers find one exploit, they can apply it repeatedly to the distributed application, to give themselves an entire botnetThat may or may not be true... In any case it's completely orthogonal to unikernels. Distributed applications, and any security advantages/disadvantages, are a fact of life.
> All code is privileged, so any remote execution exploit in any piece of code makes you own the whole machine (physical or virtual, as the case may be). A buffer overflow in some HTML-template-stuffing code is as good as one in an ethernet interrupt routine. Wee!
I'm afraid you're parroting what you learned about security without really understanding it. Yes, an exploit will give you access to the individual machine. But what does that mean if the machine is a single trust domain to begin with, with no privileged access to anything other than the application that is already compromised? In traditional shared systems, running code in ring0 is a big deal because the machine hosts multiple trust domains and privileged code can hop between them. That doesn't exist with unikernels.
Add to that the tactical advantages of unikernels: vastly reduced attack surface, a tendency to use unikernels for "immutable infrastructure" which means you're less likely to find an opportunity to plant a rootkit before the machine is wiped, and the fact that unikernels are vastly less homogeneous in their layout (because more happens at build time), making each attack more labor-intensive. The result is that the security story of unikernels, in practice and in theory, is very strong.