The by-eye measurement was done by the author himself, so you have a point.
Still, apparently that measurement was much simpler (using only 131 of the plates; the digital measurement used 1232) and only done to be sure that the dimming was not a byproduct of the digital analysis method.
In other words, the real data for the paper is based on digital analysis, not on the by-eye measurement. More importantly, according to the paper, there were 5 control stars also measured digitally. They didn't show the dimming. The paper's graph (http://arxiv.org/pdf/1601.03256v1.pdf) plots two of them.