The examples of difficult subject matter the author gives (particularly math) are so intimidating to some people that they miss out on a lot of great stuff because they conclude "I could never do that".
I don't think the author wants people to make poor time estimates and suffer budget overruns.
To me, the message of the article reads: "If you think something looks worthwhile but difficult, take a stab anyway. Often the hairiest, prickliest parts of the undertaking from an outsider's perspective aren't that tough at all once you're in the thick of it"
I 100% agree with you about how valuable conservatism is when you're planning, but I think the author's encouragement is intended for people who haven't even considered planning yet.