The South as a region is very distinct from the rest of the country: settled by different ethnic groups (no, not all 'whites' are genetically identical twins; consider the different genetic BMIs by country in http://www.nature.com/ng/journal/v47/n11/full/ng.3401.html ), different cuisines, different industrial patterns, different weather and climate... It is eyebrow-raising, to say the least, to bring in the Civil War as at all relevant and speculate even more wildly that it has intergenerational effects.
If they want to talk about that, they should be trying some sort of regression-discontinuity or other natural-experiment design involving borders or Civil War activity, not, effectively, saying 'look at how different the South is! the Civil War?!' Uh, yeah, I think we all know the South differs. That's not very helpful.