Those are jobs for the CERN facility alone (which also probably includes services like HR, translation, janitorial, etc). But thousands more work essentially full time as "CERN users". These scientists and engineers are typically paid by member organizations around the world, i.e. universities (think professors, postdocs, grad students) and national labs (LBNL/Brookhaven/Fermilab etc in the US, in2p3 in France, DESY in Germany).
The ATLAS and CMS author lists are about 3000 each (generally all physicists), but all told there are over 10,000 scientists, technicians, and engineers who basically work full time running the LHC and its associated detectors.
That's not to mention all the people working on any of CERN's many other projects that have nothing to do with the LHC.