If the percentage of "good ones" is so high, why do they protect the "bad ones"?
There is probably also a strong element of fear- as mentioned in the article, many of these police really are trained in aggressive response, and that becomes both muscle memory and instinct, it genuinely does.
I think many great officers imagine the "what would I have done" and in their doubt and worry over that hypothetical, provide a unified front against the repercussions of justice for their fellow officers, in case the same should ever happen to them.