The idea that some complex systems can simply grow without inputs is not unfounded in the biological world -- witness, for example, grazing animals such as cows and giraffes that plop out of the birth canal, shakily stand up, and being trotting around. They couldn't have trained that system in the womb.
Similarly, human babies who are growing complex neural systems over years might look like they are learning, but instead they are just growing. That's not to say that we don't learn things later on-- certainly we do-- but that's not evidence that babies are necessarily learning all the skills they become capable of in toddlerhood.
I guess the Chomsky debate is whether grammar is one of those basic skills. Would two children left unsupervised by adults through their formative years construct their own language that surpasses the communication exhibited by gorillas for example?
Shine a light in their eyes, and yes they react. As does everything else with eyes.
I think it's a quite nice analogy. There are structures present, but they have to be trained as well. Suppose you have a hierarchical Dirichlet process as prior, you still need data to be able to define what clusters with what. And of course I won't postulate such a simple process as representing our newborn brains.
From Wikipedia: "At birth, visual structures are fully present yet immature in their potentials. From the first moment of life, there are a few innate components of an infant's visual system. Newborns can detect changes in brightness, distinguish between stationary and kinetic objects, as well as follow kinetic objects in their visual fields. However, many of these areas are very poorly developed."
Your extreme case would be that there is a priori no reason to have language processed in certain parts of the brain, like Broca's or Wernicke's regions.
It is of course possible that these are just strategically located. However, newborns with damage to these regions by oxygen deprevation at birth can already suffer from linguistic impairments.