For the record, here's the response to that article: http://www.dvorak-keyboard.com/dvorak2.html
What's the story on the "KEYTIME" study alluded to in the response above?
1. I don't think the superiority of one or the other is really the issue here. The issue is making the switch. Those studies are addressing whether it's worth it to switch.
The bottom line is that Dvorak is more efficient in terms of movement. It's optimized for typing in English (other romance languages are quite similar) and QWERTY just isn't.
2. From personal experience, I think that the mappings of punctuation are superior in Dvorak. I especially like having the dash and underscore easily accessible (next to Return) for programming. I also find punctuation more natural overall in Dvorak.