not utilizing weapons and tools available to full potential vs possible harm to some marine life... guess what a soldier chooses?
It's not "possible", it is certain and documented. 155 whales and dolphins killed in 5 years and over 2000 injured [0]. And by accounts from marine biologists, they are dying agonizing deaths.
[0] http://www.cbsnews.com/news/navy-to-limit-some-training-that...
That's just the US, of course. Pick a natural disaster anywhere in the world - the military(or militaries) of the region are the first to respond and form the basis of the relief efforts thereafter.
No, the military is there to win wars. When you're in a fight for your life, you don't much care if you trample on a bush, or even break your own bones.