This has been the plan for several years. I remember seeing block diagrams for GlobalPlatform's Trusted Execution Environment[1] that were based on the idea of the "Rich OS" (OSX, Linux, etc) being able to run more or less normally, with something that isn't really a hypervisor providing the "secure"/"trusted" environment.
The idea is that a combination of a SecureBoot-style trusted boot sequence and technologies like Intel's SGX instructions to create an area that is protected from everything else, root included.
Ever since (heavily controlled) iOS was accepted by the tech crowd as a replacement for a proper General Purpose Computer, we've been slowly loosing more and more control. At least there seems to be workarounds for this particular OSX "feature". It is incredibly important to stop this trend now; it will be a lot harder to work around these restrictions when it gets hardware support.
[1] http://i.imgur.com/rjbzWyB.jpg