As I've understood, the accusation for rape in this case is for Assange starting to have sex with the alleged victim while she was sleeping, without wearing a condom (the "not wearing a condom" is the key part here; otherwise it apparently would have been technically illegal, but "consentual" in practical terms). Are you really saying that that is "only slightly less bad" than murder?
The 5 year limit, btw, only applies to the accusations for "Unlawful coercion" and "Sexual molestation" (times two). The rape accusation will remain open for another five years (unless the prosecutor decides to drop it).