I am using Flow Router https://github.com/kadirahq/flow-router to route the app. And this is the package I'm using for pagination https://atmospherejs.com/miguelalarcos/flow-router-paginatio.... So far it hasn't let me down (there are a few bugs with the subscriptions on each individual page) but if you play around with the work style filter you'll see the collection reactivity and how it's reflected on the subscription and pagination. Thanks for your feedback!
Waiting for Meteor to support pagination natively.